Package: TIGERr 1.0.2

TIGERr: Technical Variation Elimination with Ensemble Learning Architecture

The R implementation of TIGER. TIGER integrates random forest algorithm into an innovative ensemble learning architecture. Benefiting from this advanced architecture, TIGER is resilient to outliers, free from model tuning and less likely to be affected by specific hyperparameters. TIGER supports targeted and untargeted metabolomics data and is competent to perform both intra- and inter-batch technical variation removal. TIGER can also be used for cross-kit adjustment to ensure data obtained from different analytical assays can be effectively combined and compared. Reference: Han S. et al. (2022) <doi:10.1093/bib/bbab535>.

Authors:Siyu Han [aut, cre], Jialing Huang [aut], Francesco Foppiano [aut], Cornelia Prehn [aut], Jerzy Adamski [aut], Karsten Suhre [aut], Ying Li [aut], Giuseppe Matullo [aut], Freimut Schliess [aut], Christian Gieger [aut], Annette Peters [aut], Rui Wang-Sattler [aut]

TIGERr_1.0.2.tar.gz
TIGERr_1.0.2.zip(r-4.7)TIGERr_1.0.2.zip(r-4.6)TIGERr_1.0.2.zip(r-4.5)
TIGERr_1.0.2.tgz(r-4.6-any)TIGERr_1.0.2.tgz(r-4.5-any)
TIGERr_1.0.2.tar.gz(r-4.7-any)TIGERr_1.0.2.tar.gz(r-4.6-any)
TIGERr_1.0.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html
DESCRIPTION |NEWS
card.svg |card.png
TIGERr/json (API)

# Install 'TIGERr' in R:
install.packages('TIGERr', repos = c('https://han-siyu.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/han-siyu/tiger/issues

Datasets:
  • FF4_qc - Accompanying QC samples of KORA FF4

On CRAN:

Conda:

3.48 score 6 stars 3 scripts 247 downloads 4 exports 4 dependencies

Last updated from:8227544bfc. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK106
source / vignettesOK131
linux-release-x86_64OK124
macos-release-arm64OK158
macos-oldrel-arm64OK170
windows-develOK64
windows-releaseOK69
windows-oldrelOK75
wasm-releaseOK102

Exports:compute_RSDcompute_targetValrun_TIGERselect_variable

Dependencies:MASSpbapplyppcorrandomForest